YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278733, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.62
Transmembrane Helix	39	59	0.78
Non-Cytoplasmic	60	66	0.41
Transmembrane Helix	67	88	0.88
Cytoplasmic	89	92	0.37
Transmembrane Helix	93	110	0.51
Non-Cytoplasmic	111	116	0.59
Transmembrane Helix	117	137	0.91
Cytoplasmic	138	150	0.86
Transmembrane Helix	151	173	0.88
Non-Cytoplasmic	174	191	0.88
Transmembrane Helix	192	213	0.88
Cytoplasmic	214	218	0.81
Transmembrane Helix	219	240	0.91
Non-Cytoplasmic	241	253	0.76
Transmembrane Helix	254	268	0.50
Cytoplasmic	269	283	0.39
Transmembrane Helix	284	305	0.86
Non-Cytoplasmic	306	363	0.47
Transmembrane Helix	364	388	0.81
Cytoplasmic	389	393	0.39
Transmembrane Helix	394	415	0.82
Non-Cytoplasmic	416	425	0.49
Transmembrane Helix	426	453	0.79
Cytoplasmic	454	460	0.50
Transmembrane Helix	461	481	0.84
Non-Cytoplasmic	482	482	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVSKSHEN KAEEQTEGVG LLERLFKLSQ HKTTVKTELM AGLTTFVTMS YIMFLNPIIM  60
   61 SKTGMPFDGL FLATCLGAAI ATILMGMYAN WPVGLAPGMG LNAFFTFSVV GSMGYSWQIA 120
  121 LGAVFLSGVI FVLMSVTRLR EWMLDSIPMS LRLAMTAGVG LFLGFIGLRF TGIVVANPDN 180
  181 VVALADMTHF GFGQFGPEAP ALGFLSFLLI AILSYRKVFG AVLIGIAVTT FIAFAMTWVL 240
  241 PTDFFVVAEA AKSFAPASGF VAYKGLLAIP EFSALEPILW KADIVGAFEV ALIPVIVTFL 300
  301 FVNIFDTAGT LMGVAERANL QDENGKIEGL SKSLKADSIS SVIGTAFGCP PVTSYVESAA 360
  361 GVAAGGRTGL TAVTIGLLFA AGVFFLPLAQ MLPGFAVDGA LIYVAMLMMS SLRGLDWDDL 420
  421 TEYAPAVCTT VMMAFTFSIA NGIAFGFITY TVLKVGAGKS SQVSNGVWAL TVLFVAKFIF 480
  481 LN