YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.90
Transmembrane Helix	15	36	0.93
Non-Cytoplasmic	37	56	0.87
Transmembrane Helix	57	78	0.94
Cytoplasmic	79	87	0.87
Transmembrane Helix	88	108	0.91
Non-Cytoplasmic	109	137	0.92
Transmembrane Helix	138	159	0.87
Cytoplasmic	160	190	0.90
Transmembrane Helix	191	211	0.80
Non-Cytoplasmic	212	237	0.83
Transmembrane Helix	238	258	0.94
Cytoplasmic	259	291	0.91
Transmembrane Helix	292	314	0.91
Non-Cytoplasmic	315	332	0.90
Transmembrane Helix	333	353	0.92
Cytoplasmic	354	366	0.84
Transmembrane Helix	367	388	0.90
Non-Cytoplasmic	389	403	0.81
Transmembrane Helix	404	424	0.90
Cytoplasmic	425	462	0.89
Transmembrane Helix	463	483	0.87
Non-Cytoplasmic	484	515	0.92
Transmembrane Helix	516	535	0.95
Cytoplasmic	536	542	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIALYNSRTW KLSSYIIALV LIVPVVVMLV GGVSASTQLF VHLWQTVLPS YLENTLLLAF  60
   61 WVVLLALVFG VFSAAIITQT NIVFKQQLRW LLLLPLAMPA YLVAYLYTDL FDYAGPVQRA 120
  121 LRGWFDWQSP NDYWFFDIRT LPGAALMLAL VLFPYIYMLT RGAFEQQDQN LIRASRLLGL 180
  181 TAKQSFFKVA LPLARPAIAV SASLVLMETL ADFATVQYFS VNTLTTAIYD TWLGYGDLGA 240
  241 ANALASILML LVLFVVLAEQ RSRAGLRHQS ARPNSKRELI QLSFSQQLIA SIFCWALVIL 300
  301 GFLLPITLLI IMAVQYSDFA QLSALLSTGI NSLKVSVFAA TIAVVIALSL GLYQRLHNDK 360
  361 YRQVPQLISG FGYAVPGTVL AMAMLSTLGP LDHWINDAAE FIGFGAPGLI LSGSLFAIVF 420
  421 ALVVRFSAIA NGTITSGIKQ IPRSLDYAPA TLGVNLRGSL TKVHLPILTP AILVAWLLVF 480
  481 VEAMKELPAV LLLRPFNFET LSSQIYQLIS DEVLEQGALG AILIVLFGLL PIVLLNKSKE 540
  541 KV