YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278638, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELLNSVSA YFQQLPWLEL VAMVLSIAYV ILAAKGSRWC WPAAFISTAL YTVIFYDVLL  60
   61 LMDSALNAYY LLMAVYGYWQ WSKQPDQNQN ESSQLTIVSW QLSWHIKVCA ALALLAMGLG 120
  121 YLMDNYSPAH FPYLDTFTTV YAVFATYLVA NKVLENWLYW IVIDLASIYL YLEKGLIPTT 180
  181 VLFIVFVIVA GYGYHKWLKL YQKSSTNLQP SAIANTR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.82
Transmembrane Helix	15	33	0.92
Cytoplasmic	34	40	0.65
Transmembrane Helix	41	72	0.69
Non-Cytoplasmic	73	102	0.72
Transmembrane Helix	103	123	0.94
Cytoplasmic	124	130	0.68
Transmembrane Helix	131	150	0.83
Non-Cytoplasmic	151	174	0.71
Transmembrane Helix	175	195	0.92
Cytoplasmic	196	217	0.85