YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSBD_COLP3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	192	0.99
Transmembrane Helix	193	220	0.83
Cytoplasmic	221	240	0.84
Transmembrane Helix	241	263	0.91
Non-Cytoplasmic	264	272	0.84
Transmembrane Helix	273	297	0.90
Cytoplasmic	298	316	0.90
Transmembrane Helix	317	339	0.90
Non-Cytoplasmic	340	352	0.80
Transmembrane Helix	353	374	0.88
Cytoplasmic	375	388	0.75
Transmembrane Helix	389	407	0.94
Non-Cytoplasmic	408	415	0.73
Transmembrane Helix	416	434	0.94
Cytoplasmic	435	450	0.90
Transmembrane Helix	451	471	0.93
Non-Cytoplasmic	472	608	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLLSLCFL MLAAFTLNPA AAQEKQSIFD VSNSSLFSND DEFLKVDQAF AFNFYQKNNL  60
   61 LEVSFDIAPE YYLYRHQFKF KGKNTQFTSV LLPDGIDHED EFFGVQKIFT ENLAFTVNLE 120
  121 NVSNDASIKI TYQGCAEKGL CYPPTSKVIK LSKFILGEST SAPSSDAAQQ TNEGEVKKSE 180
  181 QHQLSDMLKQ DSLLLTLIAF FVGGLLLSFT PCVFPMYPIL TGIIVGQGEG LTTKKAFTLS 240
  241 FFYVQGMAIT YTLLGVVVAM AGAKFQAVFQ HPIVLIGLSI LFIFLALSMF GVFNLALPAS 300
  301 WQNKLNNVSN KQKGGSITGV LMMGVISGLV ASPCTTAPLT GALLYISQTG DVVLGASALY 360
  361 ALSLGMGLPL LILGSSGGKL LPKAGAWMNI IKNIFGLLLL AVPVFLLERF IPEVASQALW 420
  421 ALLILVSASY FYVANQNHAA AQNVQQGKGF WYGLRSLVIF LMLFFGANLA YQLIYPSSNN 480
  481 VTNNAQHASF KQVTSLAQLE DEVKKANMQG KTVMVDLYAD WCIACKEFEK YTFVDADVQK 540
  541 ALSNSVWLQI DMTEFDSTDN AELVQHYTIL GLPSILFFDL QGNELTKQRT TGFMKAAEFS 600
  601 AHVKSIFK