YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144280, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLHFNLIT LACVTLFGCE NPDGIADDAQ TRDYSTIFTP LPSKTIYPSN NPYSETKERL  60
   61 GELLFWDPIL SGDKDTSCAS CHHPDFGWAD GRILSIGSDG IGLGPQRYGF QVTSIHAPTI 120
  121 MNVAYTGIKN NESDSSFVSG GYFWDLRADT LEEQSLGPIK NPVEMLGYNN NEKEIMADIV 180
  181 ERLRLIPEYV TLFEQAFGVT EAVSSENIVK AIATFERKIT SPNTRFDRFL SGEQSIFTQQ 240
  241 EIIGLNKFID GGCARCHLGP MLSDNILHLG EAIIGTDIVR TPSLRNISYT APYMHDGSRA 300
  301 RLIDAIADYE NRGDLDVTIG EDDFADIEAF LQTVNTDDFY KGIPTIVPSG LTVGGNIN

Type	Start	End	Confidence
Signal Peptide	1	26	0.84
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	358	0.99