YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278502, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFKYTGRN ANGSQVKDSI DAANVDIAAE KLFKKGITPI SIIAAKTGGN AASIDVFELL  60
   61 NNGRVSLEEL IVFCRQMYAL MRSGVPILRA INGMVESANS ISLKKALTDI GKQLEGGYTF 120
  121 SSALNGHPKI FDHLFVSLVH VGENTGQLDQ AFLKLTTYLE RELDTRKRIK AALRYPSMVL 180
  181 IAIAAAMVIL NIFVIPTFAN MFTRLGAELP FATRFIIASS NLFINYWHYM LLGIFVVLIM 240
  241 IRKSLKTKKG RYQWDRRKIK IPIIGSIIER SILARFSHSF AIVLKAGVPM TTGLTLVAEA 300
  301 VDNSYMQEKI SAMRQGIESG ESLLRSAVAS ALFTPLVLQM VAVGEETGRV DELLTEVGDY 360
  361 YEREVDYDLA TLTARIEPLL LVVVAAMVLV LALGIFTPMW DMASAMQG

Type	Start	End	Confidence
Cytoplasmic	1	174	0.99
Transmembrane Helix	175	197	0.90
Non-Cytoplasmic	198	223	0.88
Transmembrane Helix	224	241	0.93
Cytoplasmic	242	378	0.67
Transmembrane Helix	379	400	0.92
Non-Cytoplasmic	401	408	0.62