YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144215, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRNSKFLSI SSLFGFIFLY APILSLIIYS FNKSKLVTVW GGWSVKWYAE LFSNQQIIDA  60
   61 AIVSLKVAFI TATLSVILGV LAGYVLSRMG KFPGKLIVSG WISAPLIMPE VITGLSLLLL 120
  121 FVSLENLIGW PAGRGITTII IAHTTFCMAY VAVIVQSRLS QMDDSLEEAA MDLGAKPHSL 180
  181 FFLITLPIIS PAIISGWLLA FTMSLDDLVI ASFVSGPGNS TLPMVIFSKI RLGVSPEVNA 240
  241 LATIMILIVA IGVVAAMWQM RKKETTL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	61	0.94
Transmembrane Helix	62	86	0.86
Cytoplasmic	87	97	0.86
Transmembrane Helix	98	122	0.85
Non-Cytoplasmic	123	135	0.77
Transmembrane Helix	136	159	0.84
Cytoplasmic	160	179	0.91
Transmembrane Helix	180	201	0.94
Non-Cytoplasmic	202	208	0.83
Transmembrane Helix	209	228	0.53
Cytoplasmic	229	237	0.46
Transmembrane Helix	238	260	0.89
Non-Cytoplasmic	261	267	0.52