YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278357, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.87
Transmembrane Helix	5	24	0.89
Cytoplasmic	25	32	0.78
Transmembrane Helix	33	56	0.81
Non-Cytoplasmic	57	68	0.81
Transmembrane Helix	69	91	0.86
Cytoplasmic	92	104	0.65
Transmembrane Helix	105	120	0.92
Non-Cytoplasmic	121	125	0.85
Transmembrane Helix	126	147	0.92
Cytoplasmic	148	175	0.93
Transmembrane Helix	176	196	0.89
Non-Cytoplasmic	197	210	0.66
Transmembrane Helix	211	231	0.84
Cytoplasmic	232	242	0.81
Transmembrane Helix	243	265	0.89
Non-Cytoplasmic	266	277	0.76
Transmembrane Helix	278	297	0.88
Cytoplasmic	298	304	0.76
Transmembrane Helix	305	322	0.88
Non-Cytoplasmic	323	326	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEQIFILLI ALVVLVWSAD KFVFGASSLA RNLGISPMII GLTIVAMGSS APEMMVAATA  60
   61 SMQGNPDTAI GNAIGSNITN IALVLGITAL LQPLTVSSQT IKREIPLILA VTALGYWLLF 120
  121 DNHFSFIEGI ILISGFAIYI ITLLVITLKK TRGKPSDDPL IIEAEQDVAA AVSMKLSLIW 180
  181 LGVGIILLPL SASFLVDSSV YIAKAYGISD LVIGLTIIAI GTSLPELAAS IMSIIKKEDD 240
  241 LALGNIIGSN IFNILAVLPI AGLIAPGNID ALAASRDAPY MLGITLLLFI LCFSRRLGAF 300
  301 RITRAKGALL LLSFIAYQVL LFSQLS