YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_COLP3
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLIEKVWFN DHPAKWLLVP MLLPLSALFW LISTLRRLSY KIGLSRSCQL SKPVIVVGNI  60
   61 GVGGNGKTPI VLYLVELTRL LGLTPGVISR GYGGKAPHYP YLLDEKSTSI EAGDEPILIQ 120
  121 QRCQVPIAVG SDRIASAKLL IAQGCDIIIS DDGLQHYRLA RDLELVVVDG KRLFGNGLLL 180
  181 PAGPLREGLW RLPKSDLVIY NGKNDQDYQE KNYPCMHMTL AATELCNLLT GERIYLTDFI 240
  241 RLNDSVNAIA GIGAPQRFFD TLKEHQFKVI NQQSFVDHHA FVLADFNEFD DNIPLLMTEK 300
  301 DAVKCHDFCK ENWWYLPVDA TFSDADRQLI IDRTQIAVQS VIQ

Type	Start	End	Confidence
Cytoplasmic	1	13	0.61
Transmembrane Helix	14	34	0.84
Non-Cytoplasmic	35	343	0.81