YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278185, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEISEQEYN QQRLQQVNEA LGSGMFVYVR KLLQHMPAYD LALILESSTA KSRPVLWQLI  60
   61 DPDFHGEVLE ELNEEVRKGI LKSMRPEKLA AVAEGMDIDD LAEVFRTLPD SIYNEVLNSM 120
  121 DSQDRSRVET ALSYEEDTAG GMMNTDTITL RPDVTVDVVL RYLRLKGDLP DATDSFYVVD 180
  181 RNNKFIGAVS LAAIVTAKAE AIVSSLINAE VEAVQAELGE QDVAQLFERH DWFSAPVVDD 240
  241 AGHLLGRITI DDVIDIIREN AEHSMMSMAG LDDEADTFAP VIKSTKQRSL WLGVNLITAL 300
  301 MAVAVTSMFE GVFQQLAILA VLNSLVPSMG GVAGNQTLTL VIRGMALGHV GDSNARALLS 360
  361 KEVAIGFLNG IIWATLIATV VAIWKQDLML GGVIAFAMLM NMTAAGLAGV SIPLLLKRLN 420
  421 IDPALAGSVI ITTVTDVVGI FAFLGTATLL LT

Type	Start	End	Confidence
Cytoplasmic	1	289	0.97
Transmembrane Helix	290	309	0.93
Non-Cytoplasmic	310	317	0.67
Transmembrane Helix	318	342	0.77
Cytoplasmic	343	362	0.84
Transmembrane Helix	363	384	0.93
Non-Cytoplasmic	385	392	0.79
Transmembrane Helix	393	416	0.91
Cytoplasmic	417	424	0.88
Transmembrane Helix	425	447	0.90
Non-Cytoplasmic	448	452	0.71