YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143867, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWNEPGNND KDPWKNKGGK NQGPPDLDEL LNDLGKKVTG IFGGKTTKGG SGSGKSFSSI  60
   61 GISILLIVAS VVYAFSGFYT IKEAEQGIVL RFGEYSGTVE PGINWKWTFV DRIIPVDMQS 120
  121 TRDMPSSGFM LTKDENVVRV EMQIQYRVVD ARKYIFSVTN ADDSLNQSLD SALRYVVGHA 180
  181 KMDDILTSGR ESIRQSVWEE LDKIIEPYNL GLIIVDVNFK DARPPNEVKD AFDDAISAQE 240
  241 DEVRFLREAE AYARGIEPRA RGRVKRMEQE AIAYKSRIVL DAQGEVARFE KILPEYQAAP 300
  301 KVTRERLYIA TMEKVYGNVS KVMVDVEGGN NMMYLPLDKI IQQQNTSNSS GKTTYAPVND 360
  361 TNVNTSPTSS SGRSDRFNNG GN

Type	Start	End	Confidence
Cytoplasmic	1	56	0.83
Transmembrane Helix	57	81	0.78
Non-Cytoplasmic	82	382	0.92