YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278067, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFELLTQLV INGLIVGLLY GVIGMCFVLV YKSTQIVNFA QGEFLLIGAW VCWASLIYLE  60
   61 LPFFLGFILS LVFMAGFGVL LQMVVLRPMI GEPIISVIMV TIGLSIFFQS LMKWIFGVSP 120
  121 QSYPQVFDTQ SINILGLNVE MAYLMSTVIA LIIMVAFYLF FKHSKHGLAM RATAFDQQAS 180
  181 QSLGVSVKHV FAMSWGIAAT VSATAGIVLG MVNGVSDSLS IMGIKVFPAV ILGGLDSIIG 240
  241 AIVGGLIIGV LENVAEFFDS QYLHIGNMYD IAPFYVLLII LWFKPYGLFG TKDIERI

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.68
Transmembrane Helix	9	31	0.92
Cytoplasmic	32	38	0.63
Transmembrane Helix	39	57	0.85
Non-Cytoplasmic	58	63	0.63
Transmembrane Helix	64	86	0.90
Cytoplasmic	87	93	0.77
Transmembrane Helix	94	116	0.89
Non-Cytoplasmic	117	140	0.83
Transmembrane Helix	141	161	0.96
Cytoplasmic	162	190	0.78
Transmembrane Helix	191	212	0.84
Non-Cytoplasmic	213	228	0.61
Transmembrane Helix	229	251	0.90
Cytoplasmic	252	262	0.62
Transmembrane Helix	263	283	0.78
Non-Cytoplasmic	284	297	0.57