YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	37	0.79
Transmembrane Helix	38	58	0.91
Cytoplasmic	59	74	0.90
Transmembrane Helix	75	98	0.87
Non-Cytoplasmic	99	113	0.89
Transmembrane Helix	114	134	0.95
Cytoplasmic	135	147	0.77
Transmembrane Helix	148	168	0.90
Non-Cytoplasmic	169	177	0.72
Transmembrane Helix	178	197	0.93
Cytoplasmic	198	243	0.95
Transmembrane Helix	244	265	0.88
Non-Cytoplasmic	266	271	0.85
Transmembrane Helix	272	294	0.91
Cytoplasmic	295	302	0.88
Transmembrane Helix	303	327	0.84
Non-Cytoplasmic	328	332	0.76
Transmembrane Helix	333	355	0.91
Cytoplasmic	356	366	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFERYLSV WVGLSIILGV ILGLWQPNIF QLITEFEIAH VNIVVAVFIW VMIYPMMVQI  60
   61 DFSSIQNVGK NPKGLVLTII INWFVKPFTM AALGWLFFNY LFADLVDPES AQEYIAGMIL 120
  121 LGVAPCTAMV FVWSQLTKGD PNYTLVQVSV NDVIMIFAFA PISAFLLGVS DIQVPWETLL 180
  181 ISVLLYVLLP LIAGVVTRRM LNKGNDKVDA QKSAEASINA DEETNTNTDS TNKSLDNLLA 240
  241 TLKPWSVIGL LATVVLLFGF QANTIISEPQ TIGLIAIPLM IQTYGIFIIA YLAAKWLKLP 300
  301 HNIAAPACLI GTSNFFELAV AVAISLFGLH SGAALATVVG VLVEVPVMLS LVYFINHTQN 360
  361 WFVEGG