YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143711, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQFKKIKQE LLNSPKTWLI TGCAGFIGSN LLETLLLLNQ KVVGLDNFAT GHQHNFDEVQ  60
   61 TQVSAEQWQN FYFVKGDIRQ LEDCQTALSH YKSGVDYILH QAALGSVPRS IADPLLTNSA 120
  121 NITGFLTMLT AAKETQVKSF VYAASSSTYG DHPALPKVED AIGKPLSPYA VTKYVNELYA 180
  181 DVFHKTYGLN CTGLRYFNVF GKRQDPDGAY AAVIPKWTVA MIANEELLIN GDGETSRDFC 240
  241 FVENAVQANI LAATANDAGK NQVYNVALGD RTSLNTLFNS LKVALQANGV DYQKSPTYQD 300
  301 FRAGDVRHSQ ADISKAKSLI GFEPEFKIQQ GIDKAMPWYI KFLN

Type	Start	End	Confidence
Cytoplasmic	1	16	0.54
Transmembrane Helix	17	32	0.57
Non-Cytoplasmic	33	344	0.98