YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFLVIGSSL AFLLYILATL AIVTRLFHPK GPNITLVLSL ATAAIIVHGF NDGLLFFSQD  60
   61 TINFNLPNVI SLVSLIITIA VTLVSLRFKV NLLLPVIYGF TGLWQLVILF IPPIDSIPLV 120
  121 VEKVILLSHI SFALIAYCVL IIATLYAFQV TYINLKLKSK NLTAVAHLPP LMQVEKQLFS 180
  181 ILTVGTAILF ISQIIGFVFL DGFLAKENAH KTILSLLSFA IYGLILWGHF EKGWRGHKVL 240
  241 VLMVSASALL TLAYFGSRFV KEFIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	27	0.89
Cytoplasmic	28	33	0.77
Transmembrane Helix	34	55	0.86
Non-Cytoplasmic	56	63	0.80
Transmembrane Helix	64	86	0.87
Cytoplasmic	87	93	0.69
Transmembrane Helix	94	114	0.89
Non-Cytoplasmic	115	128	0.74
Transmembrane Helix	129	150	0.90
Cytoplasmic	151	177	0.86
Transmembrane Helix	178	200	0.91
Non-Cytoplasmic	201	208	0.79
Transmembrane Helix	209	230	0.89
Cytoplasmic	231	238	0.78
Transmembrane Helix	239	257	0.95
Non-Cytoplasmic	258	265	0.79