YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71277847, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCCAAEAK NASERKLLWI VLILNFSMFV IEFIAGWLAN SSGLLADSLD MLADAAVYSL  60
   61 SLYAVGKSLL YKGRAALANG YLQLSLGLLV LVDVARRIWL GSEPQSELML SIGFMALIVN 120
  121 MICFVLLYQF RQGDVNLKAS WICSRNDMLA NIGIIISAVL VGQFDAAWPD WVIGSVIAGI 180
  181 VIHSSLAIIN EAKVSIQSDA VADKNRT

Type	Start	End	Confidence
Cytoplasmic	1	16	0.99
Transmembrane Helix	17	39	0.91
Non-Cytoplasmic	40	50	0.81
Transmembrane Helix	51	71	0.81
Cytoplasmic	72	79	0.74
Transmembrane Helix	80	100	0.86
Non-Cytoplasmic	101	107	0.91
Transmembrane Helix	108	128	0.95
Cytoplasmic	129	147	0.78
Transmembrane Helix	148	164	0.91
Non-Cytoplasmic	165	170	0.65
Transmembrane Helix	171	190	0.84
Cytoplasmic	191	207	0.85