YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86559337, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.99
Transmembrane Helix	48	68	0.92
Non-Cytoplasmic	69	74	0.78
Transmembrane Helix	75	95	0.93
Cytoplasmic	96	114	0.94
Transmembrane Helix	115	138	0.89
Non-Cytoplasmic	139	160	0.96
Transmembrane Helix	161	183	0.90
Cytoplasmic	184	222	0.97
Transmembrane Helix	223	242	0.90
Non-Cytoplasmic	243	276	0.87
Transmembrane Helix	277	299	0.88
Cytoplasmic	300	392	0.62
Transmembrane Helix	393	417	0.85
Non-Cytoplasmic	418	424	0.44
Transmembrane Helix	425	445	0.91
Cytoplasmic	446	456	0.41
Transmembrane Helix	457	487	0.75
Non-Cytoplasmic	488	509	0.45
Transmembrane Helix	510	533	0.91
Cytoplasmic	534	566	0.47
Transmembrane Helix	567	589	0.82
Non-Cytoplasmic	590	607	0.58
Transmembrane Helix	608	631	0.88
Cytoplasmic	632	644	0.57
Transmembrane Helix	645	667	0.63
Non-Cytoplasmic	668	693	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVERAKKDD DLNAAVTTAG DGGSAEEASV ERIFEANGEA PPTWQNQLTI RAMIVSFVLS  60
   61 ILFTFVVMKL NLTTGIIPSL NISAGLLGFF FVKTWTKLLS KAGFLKQPFT RQENTVIQTC 120
  121 VVASSGIAFS GGFGSYLFGM SDVVAKQSAD ANTPLNIKNP HLGWMIGFLF IVSFLGLFSV 180
  181 VPLRKIMIVD FKLTYPSGTA TAHLINSFHT PQGAKLAKKQ VRALGKFFSF SFLWGFFQWF 240
  241 FTSGDDCGFA SFPTFGLKAY KNKFYFDFSA TYVGVGMICP YLINVSLLVG SILSWGIMWP 300
  301 LIDAQKGKWY SADLKSSSLH GLQGYKVFIA IAMILGDGLY NFIKVLGRTV VGLYTQFKKR 360
  361 DVLPVNDRSS SPTAVTISYD DKRRTELFLK DRIPSWMAIS GYVIMAIVSI ITVPHIFPQL 420
  421 KWYHILTMYI IAPVLAFCNA YGCGLTDWSL ASTYGKLAIF TIGAWAGAAN GGVLAGLAAC 480
  481 GVMMNIVSTA SDLMQDFKTG YMTLASPRSM FLSQAIGTAM GCVISPCVFW LFYKAFPDFG 540
  541 QTGTAYPAPY ALVYRNMSIL GVEGFSALPK HCLMLCYVFF AAAVFVNGVR DLVGPKWARF 600
  601 IPLPMAMAIP FYIGGYFTID MCVGSLILFI WRKLNKPKAD AYSSAVASGL ICGEGIWTLP 660
  661 SSILALAGVK PPICMKFLSG ATNVKVDSFL NPS