YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68164987
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGRMSVP PSPKQLESDV LKRVPYSKPP FTLGQIKKAI PPHCFERSVL RSFSYVIQDL  60
   61 TIASIFYYIA TNYFHLLPQP LSYVAWPIYW SLQGCVLTGV WVIAHECGHH AFSDYQWLDD 120
  121 TVGLILHSCL LVPYFSWKHS HRRHHSNTAS LERDEVFVPK KKSNIRWLSK YLNNPLGRVL 180
  181 TLIITLTLGW PLYLAFNVSG RPYNRFACHY DPYGPIYTDR ERTEICISDA GVLAVTYGLY 240
  241 SLAVAKGLAW VVCVYGVPLL VVNAFLVMIT YLQHTHPSLP HYDSSEWDWL RGALATVDRD 300
  301 YGILNKVFHN ITDTHVAHHL FSTMPHYNAM EATKAIKPIL GEYYQFDGTP FYKAMWREAK 360
  361 ECVYVEPDDR DQSKGVYWYK NKF

Type	Start	End	Confidence
Cytoplasmic	1	54	0.83
Transmembrane Helix	55	76	0.63
Non-Cytoplasmic	77	84	0.52
Transmembrane Helix	85	105	0.77
Cytoplasmic	106	175	0.63
Transmembrane Helix	176	196	0.90
Non-Cytoplasmic	197	246	0.77
Transmembrane Helix	247	271	0.85
Cytoplasmic	272	383	0.75