YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115292144, gi...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFTLVRGAS LCGVAALVLL IISTSTDYWM QYRYSGNAAN QGLWRFCINR RCHAHTLTVA  60
   61 FWDATRAFML LSVLSCFAGV LLGLTASKRA RSRRVKTGGI TLLLSGFLAL LALSIYTGMT 120
  121 ISYFGRRYID WRFSWSFILG WISVILALAA GVLKVCAYQR SVSEATPVSV SDS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	27	0.85
Non-Cytoplasmic	28	66	0.92
Transmembrane Helix	67	86	0.96
Cytoplasmic	87	97	0.88
Transmembrane Helix	98	119	0.90
Non-Cytoplasmic	120	136	0.79
Transmembrane Helix	137	157	0.92
Cytoplasmic	158	173	0.98