YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56236460
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.74
Transmembrane Helix	21	43	0.93
Cytoplasmic	44	51	0.71
Transmembrane Helix	52	72	0.92
Non-Cytoplasmic	73	83	0.50
Transmembrane Helix	84	99	0.88
Cytoplasmic	100	109	0.68
Transmembrane Helix	110	133	0.89
Non-Cytoplasmic	134	148	0.71
Transmembrane Helix	149	168	0.62
Cytoplasmic	169	178	0.50
Transmembrane Helix	179	198	0.49
Non-Cytoplasmic	199	217	0.54
Transmembrane Helix	218	240	0.94
Cytoplasmic	241	253	0.47
Transmembrane Helix	254	268	0.46
Non-Cytoplasmic	269	269	0.31
Transmembrane Helix	270	291	0.83
Cytoplasmic	292	303	0.55
Transmembrane Helix	304	323	0.82
Non-Cytoplasmic	324	341	0.70
Transmembrane Helix	342	365	0.86
Cytoplasmic	366	383	0.72
Transmembrane Helix	384	402	0.94
Non-Cytoplasmic	403	416	0.66
Transmembrane Helix	417	438	0.90
Cytoplasmic	439	544	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNVSSIGS RLQMLTTSDH ASVVSMNLFV ALLCVCIVIG HLLEENRWMN ESITALIIGL  60
   61 CTGVVILLIS GGKSSHLLAF SEDLFFIYLL PPIIFNAGFQ VKKKQFFRNF MTIMLFGAVG 120
  121 TLISCFIISV GAMQFFKKLD IGPLDIGDYL AIGAIFAATD SVCTLQVLNQ DETPLLYSLV 180
  181 FGEGVVNDAT SVVLFNAIQS FDLTNINAAI AWDFARNFFY LFLASTLPGV VTGLISAYII 240
  241 RRLYFGRHST DREVALMMLM AYLSYMLAEL FYLSGILTVF FCGIVTSHYT WHNVTESSRV 300
  301 TTKHAFATLS FVAETFIFLY VGMDALDIEK WRFVSHSPGT SVAVSSILLG LVMVGRAAFV 360
  361 FPLSFLSNLA KKSPNEKISF KQQFIIWWAG LMRGAVSMAL AYNKFTSAGH THLRGNAIMI 420
  421 TSTITVVLFS TVLFGLMTKP FIKILLPHPK RQSRSMAISS DPTTPKSFTI PLLGEGQDSL 480
  481 DDLGGHDIDH PSSIRALLTT PTHNVHHYWR QFDDAFMRPM FGGRGFVPFV PGSPTEHNPP 540
  541 NQWH