YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71754687
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTMEKPRLP TVATAWLLLT APVVLLDAVF VLNRPKTPDT PHPLGELVLF QPWTVYATYD  60
   61 RRYAPNEDAF VVAQSWMNLL EVTLGLLALL LSFSGYWKSA IKLAAVVSVM TFSKTLLYFV 120
  121 MDFVEGGEYT RHIGYLDKLL MVLLPSSVWI IAPFFTAIRC LQSLSQAGSP GSGDNSPKKR 180
  181 KNK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.81
Transmembrane Helix	12	31	0.88
Non-Cytoplasmic	32	74	0.87
Transmembrane Helix	75	96	0.81
Cytoplasmic	97	102	0.61
Transmembrane Helix	103	121	0.76
Non-Cytoplasmic	122	138	0.64
Transmembrane Helix	139	161	0.83
Cytoplasmic	162	183	0.72