YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71480741
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLLLLLIA VSTVFADDDA YIGVNIGTDL ADMPHPTQVV ALLKAQQIRH VRLYNADRGM  60
   61 LLALANTDIK VAISVPNEQL LGIGQSNSTA ANWVSQNVVA HYPATNITTI CVGSEVLTTL 120
  121 PNAAHVLVSA LKYIQSALVA SNLDRQIKVS TPLSSSIILD SFPPSQAFFN RSLNPVMVPL 180
  181 LSFLQSSGSS LMLNIYPYYD YMQSNGVIPL DYALFRPLPS NKEAVDANTL LHYSNVFDAM 240
  241 VDAAYFAMAY LNFTNIPVMV TESGWPSKGD SSEPDANLDN ANTYNSNLIK HVLNKTGTPK 300
  301 HPGISVSTYI YELYNEDMKP GPLSEKNWGL FDANGVPIYI LHLTGSGSVL ANDTANQTYC 360
  361 TAKDGADAKM LQAALDWACG PGKVNCSALL QGQPCYEPDT VAAHATYAFD TYYQQMGKAS 420
  421 GTCDFNGVAT ITTTNPTHGS CVFPGSNGKN GTFLNSTAPS LNSTSSGCPA RYMRGSASAS 480
  481 AIVAVGILSW SLVFL

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	471	0.96
Transmembrane Helix	472	494	0.63
Cytoplasmic	495	495	0.62