YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698944
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSEFEEMLKE ILQEINDQGF NKDNIIDKIK DKLQEKDPRV YNGWKDNKFD IDHLFLPGIM  60
   61 LRMIAKDTKL TGFFIEYERT LLYVAAEHGH IQIVENLLDN GAKTGIKNGY CKEAPLHVAA 120
  121 KHVHIRIVEI LSKKEADIDL KNRYGETPLH YAAKYGHTQV LENLLGRSTN VNVQSEVGRT 180
  181 PLHDAANNGH IEVVKHLIKK GADVNVQSKV GRTPLHNAAN NGYIEVVKHL IKKEADVNVV 240
  241 DQYGRTPLHD AAKHGRIEVV KHLIEKEADV NVQSKVGRTP LHNAAKHGHT QVVEVLLKKG 300
  301 ADVNIQDRGG RTPLHYAVQR GYPKLAKLLL NDGADPSFIH RSKAITAGVA VGILAAIVTP 360
  361 LALVYATALP ALAIIGITVA SALIVGGISY GAA

Type	Start	End	Confidence
Cytoplasmic	1	343	0.78
Transmembrane Helix	344	364	0.92
Non-Cytoplasmic	365	370	0.54
Transmembrane Helix	371	392	0.91
Cytoplasmic	393	393	0.78