YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71052059
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.96
Transmembrane Helix	55	78	0.89
Non-Cytoplasmic	79	118	0.92
Transmembrane Helix	119	142	0.88
Cytoplasmic	143	191	0.96
Transmembrane Helix	192	211	0.94
Non-Cytoplasmic	212	217	0.73
Transmembrane Helix	218	238	0.93
Cytoplasmic	239	294	0.96
Transmembrane Helix	295	316	0.88
Non-Cytoplasmic	317	332	0.74
Transmembrane Helix	333	353	0.86
Cytoplasmic	354	707	0.97
Transmembrane Helix	708	732	0.82
Non-Cytoplasmic	733	753	0.85
Transmembrane Helix	754	776	0.90
Cytoplasmic	777	833	0.90
Transmembrane Helix	834	853	0.72
Non-Cytoplasmic	854	857	0.51
Transmembrane Helix	858	878	0.80
Cytoplasmic	879	935	0.67
Transmembrane Helix	936	960	0.70
Non-Cytoplasmic	961	972	0.50
Transmembrane Helix	973	993	0.91
Cytoplasmic	994	1286	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEAAKNGT AWRPTSAEGD FELGISSKQK RKKTKTVKMI GVLTLFRYSD WQDKLFMSLG  60
   61 TIMAIAHGSG LPLMMIVFGE MTDKFVDTAG NFSFPVNFSL SLLNPGKILE EEMTRYAYYY 120
  121 SGLGAGVLVA AYIQVSFWTL AAGRQIRKIR QKFFHAILRQ EIGWFDINDT TELNTRLTDD 180
  181 ISKISEGIGD KVGMFFQAVA TFFAGFIVGF IRGWKLTLVI MAISPILGLS AAVWAKILSA 240
  241 FSDKELAAYA KAGAVAEEAL GAIRTVIAFG GQNKELERYQ KHLENAKEIG IKKAISANIS 300
  301 MGIAFLLIYA SYALAFWYGS TLVISKEYTI GNAMTVFFSI LIGAFSAGQA APCIDAFANA 360
  361 RGAAYVIFDI IDNNPKIDSF SERGHKPDSI KGNLEFNDVH FSYPSRANVK ILKGLNLKVQ 420
  421 SGQTVALVGS SGCGKSTTVQ LIQRLYDPDE GTINIDGQDI RNFNVNYLRE IIGVVSQEPV 480
  481 LFSTTIAENI CYGRGNVTMD EIKKAVKEAN AYEFIMKLPQ KFDTLVGERG AQLSGGQKQR 540
  541 IAIARALVRN PKILLLDEAT SALDTESEAE VQAALDKARE GRTTIVIAHR LSTVRNADVI 600
  601 AGFEDGVIVE QGSHSELMKK EGVYFKLVNM QTSGSQIQSE EFELNDEKAA TRMAPNGWKS 660
  661 RLFRHSTQKN LKNSQMCQKS LDVETDGLEA NVPPVSFLKV LKLNKTEWPY FVVGTVCAIA 720
  721 NGGLQPAFSV IFSEIIAIFG PGDDAVKQQK CNIFSLIFLF LGIISFFTFF LQGFTFGKAG 780
  781 EILTRRLRSM AFKAMLRQDM SWFDDHKNST GALSTRLATD AAQVQGATGT RLALIAQNIA 840
  841 NLGTGIIISF IYGWQLTLLL LAVVPIIAVS GIVEMKLLAG NAKRDKKELE AAGKIATEAI 900
  901 ENIRTVVSLT QERKFESMYV EKLYGPYRNS VQKAHIYGIT FSISQAFMYF SYAGCFRFGA 960
  961 YLIVNGHMRF RDVILVFSAI VFGAVALGHA SSFAPDYAKA KLSAAHLFML FERQPLIDSY1020
 1021 SEEGLKPDKF EGNITFNEVV FNYPTRANVP VLQGLSLEVK KGQTLALVGS SGCGKSTVVQ1080
 1081 LLERFYDPLA GTVFVDFGFQ LLDGQEAKKL NVQWLRAQLG IVSQEPILFD CSIAENIAYG1140
 1141 DNSRVVSQDE IVSAAKAANI HPFIETLPHK YETRVGDKGT QLSGGQKQRI AIARALIRQP1200
 1201 QILLLDEATS ALDTESEKVV QEALDKAREG RTCIVIAHRL STIQNADLIV VFQNGRVKEH1260
 1261 GTHQQLLAQK GIYFSMVSVQ AGTQNL