YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71051039
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIVDAYGVGS YREVNPALFT IITFPFLFGV MFGDLGHGFV MFLFALLLVL NENHPRLSQS  60
   61 QEILRMFFDG RYILLLMGLF SVYTGLIYND CFSKSLNLFG SGWNVSAMYS SSHSPEEQRK 120
  121 MVLWNDSTIR HSRTLQLDPN IPGVFRGPYP FGIDPIWNLA TNRLTFLNSF KMKMSVILGI 180
  181 FHMTFGVILG IFNHLHFRKK FNIYLVSVPE ILFMLCIFGY LIFMIIYKWL AYSAETSREA 240
  241 PSILIEFINM FLFPSSETHG LYPGQAHVQK VLLALTVLAV PVLFLGKPLF LLWLHNGRSC 300
  301 FGVSRSGYTL VRKDSEEEVS LLGSQDIEEG NNRMEEGCRE MTCEEFNFGE ILMTQAIHSI 360
  361 EYCLGCISNT ASYLRLWALS LAHAQLSDVL WAMLMRVGLR VDNTYGVLLL LPVMTFFAVL 420
  421 TVFILLVMEG LSAFLHAIRL HWVEFQNKFY VGAGTKFVPF SFSLLSSKFS KDDSIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.67
Transmembrane Helix	21	50	0.80
Cytoplasmic	51	67	0.74
Transmembrane Helix	68	88	0.87
Non-Cytoplasmic	89	173	0.61
Transmembrane Helix	174	197	0.86
Cytoplasmic	198	202	0.51
Transmembrane Helix	203	227	0.81
Non-Cytoplasmic	228	270	0.56
Transmembrane Helix	271	291	0.91
Cytoplasmic	292	375	0.84
Transmembrane Helix	376	395	0.56
Non-Cytoplasmic	396	404	0.55
Transmembrane Helix	405	432	0.78
Cytoplasmic	433	476	0.58