YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68534794
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHEVLLAA TYLLGTLAAF CLGQSGRDGP GKKEHEKGRG FVGAQVMLSG SNSKCQGLVE  60
   61 VQMNGMKTVC SSSWRLSQDL WKNANEASTV CQQLGCGNPL ALGHLTLWNR PKNQILCQGP 120
  121 PWSFSNCSTS SLGQCLPLSL VCLEPQKTTP LPTTTLPTTM PEPTAPPRLQ LVPGHEGLRC 180
  181 TGVVEFYNGS RGGTILYKAK ARPLPIRWEA QNGSCTSLQQ CFQKTTVQEG SQALAVVCSD 240
  241 FQPKVQSRLV GGSSVCEGIA EVRQRSQWAA LCDSSAARGP GRWEELCQEQ QCGNLISFHV 300
  301 MDADRTSPGV LCTQEKLSQC YQLQKKTHCK RVFITCKDPN PVGLAPGTVA SIILTLVLLV 360
  361 VLMVMCGPLI YKKLVKKFRQ KKQRQWIGPT GVNQSMSFHR SHTATVRSQV ENPAASHVDN 420
  421 EYSQPPRNSR LSAYPALEGA LHRSSTQPDN SSDSDYDLQV AQRL

Type	Start	End	Confidence
Signal Peptide	1	23	0.95
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	348	0.99
Transmembrane Helix	349	371	0.91
Cytoplasmic	372	464	0.97