YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S36A4_XENLA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.88
Transmembrane Helix	94	112	0.78
Non-Cytoplasmic	113	117	0.70
Transmembrane Helix	118	139	0.87
Cytoplasmic	140	180	0.92
Transmembrane Helix	181	202	0.92
Non-Cytoplasmic	203	228	0.88
Transmembrane Helix	229	246	0.94
Cytoplasmic	247	253	0.84
Transmembrane Helix	254	275	0.93
Non-Cytoplasmic	276	292	0.94
Transmembrane Helix	293	313	0.93
Cytoplasmic	314	325	0.91
Transmembrane Helix	326	349	0.88
Non-Cytoplasmic	350	370	0.90
Transmembrane Helix	371	391	0.85
Cytoplasmic	392	411	0.81
Transmembrane Helix	412	430	0.95
Non-Cytoplasmic	431	435	0.76
Transmembrane Helix	436	458	0.86
Cytoplasmic	459	468	0.84
Transmembrane Helix	469	492	0.86
Non-Cytoplasmic	493	522	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATELGVSG EGEEIDMEVM RPLIESEDRF EGTYGEKKHL QRYLNSDNKK DEEVMKPLIE  60
   61 NEDDSDGTCD EHQYLQRHPD LDNKDGLTFF QTLIHLLKGN IGTGLLGLPL AMKNAGVLLG 120
  121 PISLLFFGII SIHCMNILVR CSHFLCQRYK KANLGYSDTV GLALEVGPGV LQRHASFGRN 180
  181 LVDWFLVVTQ LGFCSVYFVF LAENIKQVFE VFLETKLQQS EIGIWSLDLR IYMFSFLPLI 240
  241 IPLVFIRDLK NLSLLSFFAN VSMAISLLIV YQYVIRNLSD PRTLPLGTSW KTYPLFFGTA 300
  301 IFAFEGIGVV LPLENRMRDK KDFSKALNIG MAIVTTLYIS LATLGYFCFG DQIKGSITLN 360
  361 LPQDSWLYQL VKILYSFGIY VTYAIQYYVP AEIILPAVTS RVQKTRKLLC EFTMRFFLVC 420
  421 LTCAVAVLIP RLDLVISFVG AVSSSTLALI LPPLVEIITY HKENLSPWVI MKDVGIAVIG 480
  481 FVGFIAGTYV TIEEMIYPIS YVPPNVSHSD FGVLNNTVLE GH