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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60327200
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMVSRKVVS SLQFFTLFYL FTVAFASTEE ATALLKWKAT FTNQNNSFLA SWTPSSNACK  60
   61 DWYGVVCFNG SVNTLTITNA SVIGTLYAFP FSSLPFLENL DLSNNNISVT IPPEIGNLTN 120
  121 LVYLDLNTNQ ISGTIPPQIG SLAKLQIIRI FNNHLNGFIP EEIGYLRSLT KLSLGINFLS 180
  181 GSIPASLGNL NNLSSLYLYN NQLSGSIPEE IGYLRSLTKL SLGINFLSGS IRASLGDLNN 240
  241 LSSLYLYHNQ LSGSIPEEIG YLRSLTKLSL GINFLSGSIP ASLGNLNNLS RLDLYNNKLS 300
  301 GSIPEEIGYL RSLTYLDLGE NALNGSIPAS LGNLNNLFML YLYNNQLSGS IPEEIGYLRS 360
  361 LTKLSLGNNF LSGSIPASLG KLNNFFSMHL FNNQLSGSIP EEIGYLRSLT YLDLSENALN 420
  421 GSIPASLGNL NNLFMLYLYN NQLSGSIPEE IGYLRSLTYL DLKENALNGS IPASLGNLNN 480
  481 LSRLYLYNNQ LSGSIPEEIG YLSSLTNLYL GNNSLNGLIP ASFGNMRNLQ ALFLNDNNLI 540
  541 GEIPSFVCNL TSLELLYMPR NNLKGKVPQC LGNISDLLVL SMSSNSFSGE LPSSISNLTS 600
  601 LKILDFGRNN LEGAIPQCFG NISSLQVFDM QNNKLSGTLP TNFSIGCSLI SLNLHGNELE 660
  661 DEIPWSLDNC KKLQVLDLGD NQLNDTFPMW LGTLPELRVL RLTSNKLHGP IRSSGAEIMF 720
  721 PDLRIIDLSR NAFSQDLPTS LFEHLKGMRT VDKTMEEPSY EIYYDSVVVV TKGLELEIVR 780
  781 ILSLYTVIDL SSNKFEGHIP SVLGDLIAIR VLNVSHNALQ GYIPSSLGSL SILESLDLSF 840
  841 NQLSGEIPQQ LASLTFLEFL NLSHNYLQGC IPQGPQFRTF ESNSYIGNDG LRGYPVSKGC 900
  901 GKDPVSEKNY TVSALEDQES NSEFFNDFWK AALMGYGSGL CIGISIIYIL ISTGNLRWLA 960
  961 RIIEELEHKI IVQRRKKQRG QRNYRRRNNR F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle