YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68348611, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	34	0.89
Cytoplasmic	35	40	0.74
Transmembrane Helix	41	62	0.87
Non-Cytoplasmic	63	73	0.73
Transmembrane Helix	74	95	0.91
Cytoplasmic	96	115	0.90
Transmembrane Helix	116	135	0.87
Non-Cytoplasmic	136	138	0.50
Transmembrane Helix	139	162	0.71
Cytoplasmic	163	165	0.46
Transmembrane Helix	166	186	0.82
Non-Cytoplasmic	187	193	0.50
Transmembrane Helix	194	213	0.85
Cytoplasmic	214	222	0.60
Transmembrane Helix	223	241	0.75
Non-Cytoplasmic	242	248	0.72
Transmembrane Helix	249	269	0.85
Cytoplasmic	270	275	0.81
Transmembrane Helix	276	296	0.89
Non-Cytoplasmic	297	310	0.80
Transmembrane Helix	311	330	0.90
Cytoplasmic	331	336	0.70
Transmembrane Helix	337	355	0.77
Non-Cytoplasmic	356	380	0.74
Transmembrane Helix	381	401	0.90
Cytoplasmic	402	416	0.84
Transmembrane Helix	417	436	0.90
Non-Cytoplasmic	437	444	0.65
Transmembrane Helix	445	467	0.89
Cytoplasmic	468	538	0.76
Transmembrane Helix	539	558	0.93
Non-Cytoplasmic	559	564	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTWQQLYSP LGSLGLSALA AVIPIVFFFL ALAVFRLKGH VAGSITLALS ILVAIFAFQM  60
   61 PADMALAAAG YGFAYGLWPI AWIIVAAVFL YKLTVKSGQF EIIRSSVLSI TDDQRLQVLL 120
  121 IGFCFGAFLE GAAGFGAPVA ITAALLVGLG FNPLYAAGLC LIANTAPVAF GALGIPIIVA 180
  181 GQVTGIDAFK IGAMTGRQLP LLSLFVPFWL VFMMDGMRGV KETWPAALVA GLSFAVTQYF 240
  241 TSNFIGPELP DITSALASLI SLTLFLKIWQ PKRTAGAQIA GATSSAAITA SAGGFGQPRQ 300
  301 TQASPYSLGQ IFKAWSPFLI LTVLVTIWTL KPFKAMFAAG GSMYGWVFNF AIPHLDQLVI 360
  361 KMAPIVTTPT AIPAVFKLDP ISATGTAIFF SALISMLLLK IDFKTGLTTL KETFYELRWP 420
  421 ILSIGMVLAF AFVTNYSGMS STMALVLAAT GAAFPFFSPF LGWLGVFLTG SDTSSNALFS 480
  481 SLQATTAHQI GVNDTLLVAA NTSGGVTGKM ISPQSIAVAC AATGLVGKES DLFRFTLKHS 540
  541 LFFATIVGLI TLAQAYWFTG MLVH