YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70732754, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAMPIRKPL KLVAFAALSL LVVSCSTSRS PQQKSSTAVR SMPGLDVNRA HKDGAPWWDV  60
   61 DVSRIPDATP TLHTGPYKAN PYTVLGKTYF PIQESKNYVA SGTASWYGTK FHGQNTANGE 120
  121 VYDLYGMSAA HKTLPLPSYV KVTNLDNNRS VILRVNDRGP FYSDRIIDLS YAAAKKLGYA 180
  181 ETGTARVKVE GIDPQQWWAQ RGRPAPLMLN EPQVAQNSAP VVTASAGTVE QWTPPPQQHA 240
  241 AAVVPVQVKN TAAASGQYLQ VGAFANPDAA ELLRSKLSGM VSAPVFISSI VRNQQTLHRV 300
  301 RLGPFGTPGE AQQAQNSVRL ANLGQASVVS AE

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	332	0.99