YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70732437, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFTEFLTVA LIHLLAVASP GPDFAVVVRE SVTHGRRAGT WTALGVGCAI FLHVGYSLLG  60
   61 IGLIVSQSIV LFNALKWLAA AYLLYIGYKA LRAQPAKPAA DDLHKEAGVR TARGAFTSGF 120
  121 VTNGLNPKAT LFFLSLFTVV INPHTPLAIQ AGYGVYLAVA TAVWFCLVAM LFSQQRVRAG 180
  181 FARMGHWFDR TMGAVLIAIG VKLAFTEMH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.72
Transmembrane Helix	7	28	0.72
Cytoplasmic	29	37	0.91
Transmembrane Helix	38	60	0.87
Non-Cytoplasmic	61	68	0.58
Transmembrane Helix	69	88	0.86
Cytoplasmic	89	119	0.86
Transmembrane Helix	120	141	0.72
Non-Cytoplasmic	142	151	0.63
Transmembrane Helix	152	173	0.90
Cytoplasmic	174	185	0.91
Transmembrane Helix	186	206	0.88
Non-Cytoplasmic	207	209	0.88