YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70732258, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.99
Transmembrane Helix	110	131	0.88
Non-Cytoplasmic	132	156	0.85
Transmembrane Helix	157	178	0.90
Cytoplasmic	179	183	0.81
Transmembrane Helix	184	204	0.79
Non-Cytoplasmic	205	235	0.84
Transmembrane Helix	236	254	0.75
Cytoplasmic	255	264	0.62
Transmembrane Helix	265	288	0.90
Non-Cytoplasmic	289	304	0.62
Transmembrane Helix	305	334	0.73
Cytoplasmic	335	346	0.50
Transmembrane Helix	347	369	0.84
Non-Cytoplasmic	370	378	0.53
Transmembrane Helix	379	399	0.56
Cytoplasmic	400	404	0.64
Transmembrane Helix	405	428	0.78
Non-Cytoplasmic	429	445	0.66
Transmembrane Helix	446	470	0.86
Cytoplasmic	471	480	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHDYSTIAS ELLHSLGGAD NLEQAAHCVT RLRLALKDPS RVDSATLNQI DLVKGSFFTG  60
   61 GLFQVVIGPG EVEKVYAALR EQTGLAASTI ADVKDKGAQK THAMQRLVRV FSDVFMPILP 120
  121 ALIIAGLLMG VNNLLGAKGM FIEGQTLLEA YPGLDGLWSL INLMANTSFV FLPALVGWSA 180
  181 AKRFGGSEIL GIVLGLMLVH PDLLNAWNYG KAVAGLDGQS LPYFDILGLF QIEKVGYQGQ 240
  241 ILPILLAAYV MSVIEKWLRA RVPNAITLLV VPITTIVVTG VLALAIIGPV TRHLGILITE 300
  301 GVVTLFDLAP VVGGAIFGLL YAPLVITGMH HMFLAVDLQL ISTQGGTFIW PMIVMSNLAQ 360
  361 GSAALAVFTM SRNARDRSMA STSAISAYFG ITEPAMFGVN LRYKFPFYAA LIGSALGSIF 420
  421 LSLNKVQASA IGVGGLPGFI SIIPQYIPMF VIGMVVALVV PFVLTCGLSL KIIRPGYRVA 480
  481