YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68346073, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVALLSVAG VALDALLGEP RRWHPLVAFG RVADRIEQRF NSAGRGWRSH GVTAWVLAVV  60
   61 PLTLVATALS WLPYVGWLVE ILALYCALGL RSLGEHVEPV AQALRTDDLE EARRRVGFLV 120
  121 SRQTSELDAT EVARAATESV LENGSDAVFA ALFWFAVAGA PGVVLYRLSN TLDAMWGYRN 180
  181 ERFERFGWAA AKIDDLLNYI PARLVALTYA LLGKTRLALK CWHRQGPTWD SPNAGPVMAA 240
  241 GAGALGVELG GAAIYHGELH QRPQLGEGEP ASAGSIDRGW QLVQRGVWLW LLILCLGAEF 300
  301 YA

Type	Start	End	Confidence
Cytoplasmic	1	50	0.92
Transmembrane Helix	51	72	0.89
Non-Cytoplasmic	73	146	0.76
Transmembrane Helix	147	169	0.87
Cytoplasmic	170	281	0.60
Transmembrane Helix	282	301	0.62
Non-Cytoplasmic	302	302	0.55