YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARNC_PSEF5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPYPIQFVS IVIPVYNEEQ SLPELLRRTE AACRQLKHEF EIVLVDDGSR DESANILQAA  60
   61 AEREDSPVVA VILNRNYGQH AAIMAGFEQC RGDVVITLDA DLQNPPEEIP RLVAQAELGY 120
  121 DVVGTVRNNR QDSAFRRWPS KLINLAVQRS TGVAMSDYGC MLRAYRRTII DAMLACTERS 180
  181 TFIPILANSF ARHTTEVLVE HAEREHGDSK YSPMRLINLM FDLITCMTTT PLRLLSIIGF 240
  241 GMAGLGALFA LMLIVLRLIF GATWAGDGTF VLFAVLFVFT GGQFIGMGLL GEYLGRMYSD 300
  301 VRARPRFFIE KVLRSQPAAP APAVTVDGLT STHTDQVSP

Type	Start	End	Confidence
Cytoplasmic	1	236	0.87
Transmembrane Helix	237	260	0.88
Non-Cytoplasmic	261	269	0.70
Transmembrane Helix	270	294	0.86
Cytoplasmic	295	339	0.83