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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68344646, gi|...
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.35
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALSAPSSA ADTAVHSALA CCHLLLQLTQ ERVPQAAAPQ SLDPDPSRDL RQAVRDYARN  60
   61 AGVDLRLERL ALTRLTPKML PLAWRNQSGE FMLLARLSDT QALVQRPSMP TPDMLDRLQL 120
  121 AEQWSGEVIR LRQSGLRFDL SWFVPELLRH RRILGEVLLC SLLLQVLALA TPLFFQAVMD 180
  181 KVMVHRALST LDVLVMTLVV VGLFEVLLKG LREYLAAHTA NRIDIGLGVK LLRHLLGLPL 240
  241 LYFKQRQVGA IITRVQELDS IREFLTGSLL TLCVDVAFTL VFFAVMAWIS WPLTLLVLLT 300
  301 LPLYALLAWF STGPLEKRIE RQFYSAARNT AFLNESVSSS ETIKSLAVEP RMQRRWESQT 360
  361 AQMVEAGFAS QTLGSAISQT VMLLQKVTAV AVICWGASRV IDLQMSIGQL IAFNMMLSHV 420
  421 SQPVAKLIEV WQQFVRVRVS VDKLGDMLNL PVEQAEGDLR PAQALRGEVR IEQLVFRYRP 480
  481 ELEWVLRGLD LQIAAGQTLG IVGPSGSGKS TLTRLLQKLY TPDGGRILID GLPLDQLQPA 540
  541 WLRSQIGVVL QENYLFNRSV RHNIALRHPT ASLESVIAAA RLAGAHDFIL RLPLGYDTVL 600
  601 AEAGSSLSGG QRQRIAIARA LMGDPRILIF DEATSALDDE SQALIQDNMA SIAQGRTVII 660
  661 IAHRLSAVRH CQRIIALEQG RISESGSHQQ LLANGGCYSR LWALQQALCK EAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle