YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70729999, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.99
Transmembrane Helix	96	116	0.92
Non-Cytoplasmic	117	122	0.72
Transmembrane Helix	123	143	0.91
Cytoplasmic	144	164	0.94
Transmembrane Helix	165	191	0.81
Non-Cytoplasmic	192	206	0.91
Transmembrane Helix	207	229	0.86
Cytoplasmic	230	238	0.84
Transmembrane Helix	239	259	0.93
Non-Cytoplasmic	260	278	0.88
Transmembrane Helix	279	302	0.88
Cytoplasmic	303	322	0.94
Transmembrane Helix	323	345	0.89
Non-Cytoplasmic	346	369	0.92
Transmembrane Helix	370	392	0.91
Cytoplasmic	393	411	0.96
Transmembrane Helix	412	431	0.93
Non-Cytoplasmic	432	437	0.68
Transmembrane Helix	438	459	0.88
Cytoplasmic	460	471	0.86
Transmembrane Helix	472	493	0.90
Non-Cytoplasmic	494	494	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGPGQTL SHQTKKYLQR INRSSAESMQ RPWNPGQSRP LFSLGHCLSG TPIRPGEWQT  60
   61 TGMWRSHRMN DQANSVDQRF ETAAPATLTR WNRQDTTWML GLFGTAIGAG TLFLPINAGI 120
  121 GGFWPLLILA LLAFPMTFYA HRGLTRFVLS GRDGADITDV VEEHFGLTAG ALITLLYFLA 180
  181 IFPILLIYSV ALTNTVDSFM TNQLHIAPPP RAILALVLIF GLLVVVRCGE QVIVKAMSLM 240
  241 VYPFIVALLF LAVFLIPHWN GGILATVSDV PAPSAFLHTL WLAIPVMVFS FNHSPIISAF 300
  301 AVDQKRRYGV HAEERSSQIL SRAHLLMVGM VLFFVFSCVL TLNPAQLAEA KAQNLSILSY 360
  361 LANHFQNPTI AFAAPLIAFV AIAKSFLGHY IGASEGLKGL IGKSGRRPGT KTLDRVTAAF 420
  421 MLVICWAVAT LNPSILTMIE TMGGPVIAAI LFLMPMYAIR KVPAMARYRG QASNVFVTLV 480
  481 GLVAITALVY SLAS