YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68343719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	146	0.98
Transmembrane Helix	147	166	0.92
Non-Cytoplasmic	167	171	0.84
Transmembrane Helix	172	194	0.89
Cytoplasmic	195	200	0.82
Transmembrane Helix	201	221	0.91
Non-Cytoplasmic	222	228	0.73
Transmembrane Helix	229	248	0.95
Cytoplasmic	249	257	0.75
Transmembrane Helix	258	279	0.91
Non-Cytoplasmic	280	288	0.88
Transmembrane Helix	289	309	0.89
Cytoplasmic	310	318	0.75
Transmembrane Helix	319	340	0.91
Non-Cytoplasmic	341	358	0.87
Transmembrane Helix	359	379	0.90
Cytoplasmic	380	441	0.84
Transmembrane Helix	442	461	0.85
Non-Cytoplasmic	462	468	0.52
Transmembrane Helix	469	491	0.84
Cytoplasmic	492	499	0.83
Transmembrane Helix	500	521	0.91
Non-Cytoplasmic	522	529	0.76
Transmembrane Helix	530	551	0.91
Cytoplasmic	552	631	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHPMCTRSG FRPTDRTLRA ADKPIRQRDR LFYPVFSTSR AALKPSVEER RIGPGLVSTR  60
   61 ALGRLYRPAR SQYPSALRAI ARVDGWGNSE WKTVYNPMDS CLGCCIQCAH NKNREPHTMN 120
  121 TPQVSQQRPE DENLGVGANM AYGLQHVLTM YGGIVAVPLI VGQAAGLSPS EIGLLIAASL 180
  181 FAGGLATLLQ TLGVPFFGCK LPLVQGVSFA GVSTMVAIVT SGGEGGFQSI LGAVIVASLI 240
  241 GLLITPVFSR ITKFFPPLVT GIVITTIGLT LMPVAARWAM GGNSRAPDFG SMSNIGLAAV 300
  301 TLVLVLLLSK IGSAAISRLS ILLAMIIGTV IALFLGMADF SGVTQGPMFG LPTPFHFGMP 360
  361 TFHVAAILSM CIVVMVTLVE TSADILAVGE IIHTKVDSKR LGNGLRADML SSMIAPIFGS 420
  421 FTQSAFAQNV GLVAVTGIKS RFVVATGGLF LVILGLLPFM GRVIAAVPTS VLGGAGIVLF 480
  481 GTVAASGIRT LSRVDYRNNM NLIIVATSIG FGMIPIAAPS FYDHFPSWFA TIFHSGISSS 540
  541 AIMAILLNLA FNHFTAGNSD QQSVFVAGTE RSLRFQDVAV LREGDYFSGG KLHDAEGNEV 600
  601 PLVGEEPGHS PNQAGDGSQP SHARGSVEAT H