YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68343402, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKAQLII EGAAPVELPI LTGTVGPDVI DVRGLTATGR FTFDPGFMST ASCESKITYI  60
   61 DGDNGILLHR GYPIEQLAEK SDYLETCYLL LNGELPTAEQ KAQFVSTVKN HTMVHEQLKS 120
  121 FFNGFRRDAH PMAVMCGVVG ALSAFYHDSL DINNPQHREI SAVRLVAKMP TLAAMVYKYS 180
  181 MGQPMMYPRN DLSYAENFLH MMFNTPCEIK PISPVLAKAM DRIFILHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGIAAL WGPAHGGANE AVLTMLDEIG DVSNIDKFIA KAKDKNDPFK 300
  301 LMGFGHRVYK NRDPRATVMK QTCDEVLKEL GINNDPQLEL AMRLEEIALT DPYFIERSLY 360
  361 PNVDFYSGII LKAIGIPTSM FTVIFALART VGWISHWKEM LSSPYKIGRP RQLYTGYESR 420
  421 DITKLEDRK

Type	Start	End	Confidence
Cytoplasmic	1	244	0.59
Transmembrane Helix	245	265	0.57
Non-Cytoplasmic	266	368	0.91
Transmembrane Helix	369	393	0.77
Cytoplasmic	394	429	0.83