YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68343371, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWTWFHKLG SPKWFYGISG KLLPWLSVAA VLLIGIGVVW GLAFAPPDYQ QGNSFRIIYI  60
   61 HVPMAMLAQS CYVMLAVCGV VGLVWKMKLA DVALQCAAPI GHSITFLALV TGAIWGKPTW 120
  121 GSWWVWDARL TSMLILLFLY AGLIALNAAI SNRDSAAKAC AVLAIVGVVN IPIIKYSVEW 180
  181 WNTLHQGATF TLTEKPAMPV EMWLPLLLTS LGFYCFFGVL LLLRMRLEVL KREARTSWVK 240
  241 AEVQRSLEAA R

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	44	0.94
Non-Cytoplasmic	45	64	0.84
Transmembrane Helix	65	85	0.94
Cytoplasmic	86	93	0.84
Transmembrane Helix	94	115	0.90
Non-Cytoplasmic	116	127	0.83
Transmembrane Helix	128	150	0.87
Cytoplasmic	151	158	0.76
Transmembrane Helix	159	178	0.91
Non-Cytoplasmic	179	202	0.95
Transmembrane Helix	203	223	0.93
Cytoplasmic	224	251	0.95