YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70729045, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTQISTWV ASFMLPLFRV TSLLMVMPVF GTTLVPRRVR LYFALAITVV IAPGLPPMPE  60
   61 VHALDLSGLL LVAEQILIGA VLGFSLQLFF QAFVVAGQIV AIQMGMGFAS MVDPTNGVSV 120
  121 AVIGQFFTML VTLLFLAMNG HLVVFEVLTE SFTTLPVGGG LMVNHYWELA GKLGWVLGAA 180
  181 LLLVLPAITA LLVVNIAFGV MTRAAPQLNI FSIGFPLTLV LGMGIVWISL ADILNQYQPL 240
  241 ASEALQFLRE LARAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.79
Transmembrane Helix	9	32	0.81
Cytoplasmic	33	40	0.64
Transmembrane Helix	41	59	0.88
Non-Cytoplasmic	60	75	0.62
Transmembrane Helix	76	102	0.76
Cytoplasmic	103	116	0.50
Transmembrane Helix	117	138	0.87
Non-Cytoplasmic	139	174	0.54
Transmembrane Helix	175	199	0.89
Cytoplasmic	200	207	0.72
Transmembrane Helix	208	231	0.89
Non-Cytoplasmic	232	255	0.78