YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70728398, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	24	0.94
Non-Cytoplasmic	25	39	0.82
Transmembrane Helix	40	61	0.87
Cytoplasmic	62	77	0.74
Transmembrane Helix	78	96	0.94
Non-Cytoplasmic	97	114	0.80
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	149	0.78
Transmembrane Helix	150	170	0.79
Non-Cytoplasmic	171	238	0.78
Transmembrane Helix	239	261	0.77
Cytoplasmic	262	310	0.71
Transmembrane Helix	311	325	0.82
Non-Cytoplasmic	326	326	0.21
Transmembrane Helix	327	341	0.57
Cytoplasmic	342	355	0.41
Transmembrane Helix	356	378	0.81
Non-Cytoplasmic	379	403	0.53
Transmembrane Helix	404	424	0.85
Cytoplasmic	425	489	0.81
Transmembrane Helix	490	510	0.86
Non-Cytoplasmic	511	520	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSNVFLF LFLPIFLGLY YLSGQRYRNL LLLIASYVFY AWWRVDFLAL FAGVTLWNYW  60
   61 IGLKVGAAGV RTKPAQRWLL LGVAVDLCIL GYFKYANFGV DSINAIMTSM GLEPFILTHV 120
  121 LLPIGISFYI FESISYIIDV YRGDTPATRN LIDFAAFVAI FPHLIAGPVL RFRDLADQFN 180
  181 NRTHTLDKFS EGCTRFMQGF IKKVFIADTL AVVADHCFAL HNPTTGDAWL GALAYTAQLY 240
  241 FDFSGYSDMA IGLGLMMGFR FMENFKQPYI SQSITEFWRR WHISLSTWLR DYLYITLGGN 300
  301 RKGTLITYRN LFLTMLLGGL WHGANFTYIV WGAWHGMWLA IEKALGINTT PRSLNPVRWA 360
  361 LTFLLVVMGW VIFRAENLHV AGRMYGAMFS FGDWSLSELN RASLTGLQVA TLILAYATLA 420
  421 FFGLRDLYRN PAPVKAKPEV TTADGPASAQ PGLIKAVPGD NPGSIHQPGY IVGTEAQVQP 480
  481 AYWTADWSRY AMRALVLLLF IASILKLSAQ SFSPFLYFQF