YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70728365, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPHLNGQPD FSNQVAEQAV HWLIEMQGGP LSPRQQQAWQ QWHDAHSEHQ RAWEHIQRVN  60
   61 QRLRGLSSPL AHAALNAPKS ASRRQVLKLL LILGAGSAAA WGLREHNPLP PLLADYRSPL 120
  121 GQRRKLQLSD GSQLQLNTSS AVDVRFDGQQ RLIRLLEGEI MLTSAQDARP LRVQTAQGQV 180
  181 SPQGARLNLR QFKDYTQLAV FSGTVGVTPL DYATTPPQVA AGQQLNFTGN SWQAPRALDA 240
  241 GSGAWSEGML VAAHMRLADF LDELGRYRRG QLNCDAQVAD LLISGSYPLD DSERILDLLE 300
  301 ISLPVKVRRF TRYWVTVQAR A

Type	Start	End	Confidence
Cytoplasmic	1	85	0.74
Transmembrane Helix	86	103	0.72
Non-Cytoplasmic	104	321	0.99