YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68342559, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPRMAGTPN RLIEVLQKMF SFIARRVGLL IPTFFGITLL TFALIRMIPG DPVEVMMGER  60
   61 RVDPEMHAQA MERLGLNKPL YAQYLDYIGK LAHGDLGESL RTRTSVWSEF TSLFPATLEL 120
  121 SMAALLFAGV LGLLAGVIAA LKRGSLFDHG VMGISLAGYS MPIFWWGLIL IMFFSVSLGW 180
  181 TPVSGRIDLL YDIEPKTGFM LIDTLLAKDT DAFFDALQHL ILPAIVLGTI PLAVIARMTR 240
  241 SSMLEVLRED YIRTAKAKGL SPARVVFVHG LRNALIPVLT VVGLQVGTLL AGAVLTETIF 300
  301 SWPGIGKWLI EAIGARDYPV VQNGILLIAC LVIMVNFVVD ILYGFANPRI RHQR

Type	Start	End	Confidence
Cytoplasmic	1	26	0.94
Transmembrane Helix	27	48	0.92
Non-Cytoplasmic	49	119	0.97
Transmembrane Helix	120	141	0.92
Cytoplasmic	142	155	0.81
Transmembrane Helix	156	181	0.76
Non-Cytoplasmic	182	218	0.94
Transmembrane Helix	219	238	0.92
Cytoplasmic	239	273	0.95
Transmembrane Helix	274	296	0.87
Non-Cytoplasmic	297	323	0.87
Transmembrane Helix	324	346	0.92
Cytoplasmic	347	354	0.95