YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49333559
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANSNEGPG LDGKWFEEEE EKNGMFGSAG PHFDEMRDDL RAPKQQFHPF EGTGVAMETA  60
   61 STVVDLVHWR DLKQSGLVFG SVLLLLFSLT QFSVVSVIAY LALAVLSATI SFRVYKSVLQ 120
  121 AVQKTDEGHP FKSYLEVEIS LSADQISKYV DKTQLYINTT MKELRRLFLV QDLVDSIKFA 180
  181 VLMWLLTYVG ALFNGLTLLI LAVISMFSVP VVYEKYQTQI DQYLGLVRTQ VNSVMGKIRE 240
  241 KVPGAKKKE

Type	Start	End	Confidence
Cytoplasmic	1	76	0.81
Transmembrane Helix	77	104	0.80
Non-Cytoplasmic	105	183	0.57
Transmembrane Helix	184	209	0.80
Cytoplasmic	210	249	0.61