YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49333539, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDQISSTTP SYDVHHDDEG EFRAEKQANS LMDEDFSSSE AQAHVPEVEG ILDLAGGAKD  60
   61 ALERHRSTMP RKEEPLLDFG EPEPEPSSTI KPEPEAPKPA PISSFGDASP KQAKPEEKEE 120
  121 KPTVAPYKCN SSCSLVELLY WRDLQRTGVV FGAGLFLLLS LSMCSIISVL SYVALALLSV 180
  181 TVSFRIYKGI LQAVQKSEDG HPFKMYLDKD TALPAEMVHK YSDSTLVHIN TVIKELRRLF 240
  241 LVEDLVDSLK FAVLMWILTY VGALFNGLTL IILGFIGAFS CPVIYEKHQA QIDHYYGLVN 300
  301 KQFKDVVGKI QAKIPGAKPK TE

Type	Start	End	Confidence
Cytoplasmic	1	148	0.91
Transmembrane Helix	149	176	0.85
Non-Cytoplasmic	177	255	0.83
Transmembrane Helix	256	279	0.86
Cytoplasmic	280	322	0.81