YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68533982
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAVTQSPR NRVAVTGGEV TLSCRQTNNH DYMYWYRQNM GDELRLIHYS YDVNRTEKGD  60
   61 VSSGYKASRP SQEDFSLILE SASLSQTAVY FCASRDTRNT EVFFGKGTRL TVVEDLKTVT 120
  121 PPKVSLFEPS EAEIADKQKA TLVCLARGFF PDHVELSWWV NGKEIRNGVS TDPQAYKESN 180
  181 NITYCLSSRL RVSAPFWHNP RNHFRCQVQF YGLTEEDNWS EDSPKPVTQN ISAEAWGRAD 240
  241 CGITSASYQQ GVLSATILYE ILIGKATLYA VLVSTLVVMA MVKRKSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	260	0.91
Transmembrane Helix	261	282	0.70
Cytoplasmic	283	287	0.68