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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ITA1_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.55
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPRRPASLE VTVACIWLLT VILGVCISFN VDVKNSMSFS GPVEDMFGYT VQQYENEEGK  60
   61 WVLIGSPLVG QPKARTGDVY KCPVGRERSM PCVKLDLPVN TSIPNVTEIK ENMTFGSTLV 120
  121 TNPKGGFLAC GPLYAYRCGH LHYTTGICSD VSPTFQVVNS FAPVQECSTQ LDIVIVLDGS 180
  181 NSIYPWESVT AFLNDLLKRM DIGPKQTQVG IVQYGANVTH EFNLNKYSST EEVLVAANKI 240
  241 GRRGGLQTMT ALGIDTARKE AFTEARGARR GVKKVMVIVT DGESHDNYRL KQVIQDCEDE 300
  301 NIQRFSIAIL GHYNRGNLST EKFVEEIKSI ASEPTEKHFF NVSDELALVT IVKALGERIF 360
  361 ALEATADQSA ASFEMEMSQT GFSAHYSQDW VMLGAVGAYD WNGTVVMQKA NQIVIPHNTT 420
  421 FQTEPTKMNE PLASYLGYTV NSATIPGDVL YIAGQPRYNH TGQVVIYKME DGDVNILQTL 480
  481 SGEQIGSYFG SVLTTIDIDK DSYTDLLLVG APMYMGTEKE EQGKVYVYAV NQTRFEYQMS 540
  541 LEPIKQTCCS SLKDNSCTKE NKNEPCGARF GTAVAAVKDL NVDGFNDVVI GAPLEDDHAG 600
  601 AVYIYHGSGK TIRKEYAQRI PSGGDGKTLK FFGQSIHGEM DLNGDGLTDV TIGGLGGAAL 660
  661 FWARDVAVVK VTMNFEPNKV NIQKKNCRVE GKETVCINAT MCFHVKLKSK EDSVYEADLQ 720
  721 YRVTLDSLRQ ISRSFFSGTQ ERRIQRNLTV RESECIRHSF YMLDKHDFQD SVRVTLDFNL 780
  781 TNPENGPVLD DALPNSVHGH IPFAKDCGNK ERCVSDLTLD VSTTEKNLLI VRSQNDKFNV 840
  841 SLTVKNKGDS AYNTRTVVQY SPNLIFSGIE EIQKDSCESN QNITCRVGYP FLRTGDVVNF 900
  901 KIIFQFNTSH LSENAIIHLS ATSDSEEPLE SLYDNEVNIS IPVKYEVGLQ FYSSASEHHI 960
  961 SVAANETVPE LINSTKDIGD EINVFYTIRK RGHFPMPELR LAISFPNLTS DGYPVLYPTG1020
 1021 WSSSDNVNCR PRSLEDPLGI NSGKKMTISK SEVLKRGTIQ DCSTCKIATI TCHLLPSDVS1080
 1081 QVNVSLILWK PTFIKAHFSS LNLTIRGELQ SENSSLTLSS SNRKRELAIQ ISKDGLPGRV1140
 1141 PLWVILLSAF AGLLLLMLLI LALWKIGFFK RPLKKKMEK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle