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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|86558328, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAHKGSSAA LSASAPSPEG TWQLALQGMS CASCARSIEQ ALAQVQGVSH GSVNFASEQA  60
   61 TVKGDPRLVD PQALIRAVER AGYRARLIQE DWQLDDLSDP ERIAQRAAER ELKLKVAIGV 120
  121 GISTVLVIGS LPMMLGMDIP GFPMWLHNPG LQLLLTAPVQ FWVGKHFYRG AWAAWQRRSA 180
  181 DMNTLVALGT SAAFFYSVFP TVFPDYFHRQ GLHPDVYYEV SAVVTTLILV GKWMEQRAKG 240
  241 QTSEAIRKLI GLQPKTARVI RHGVEQDIPI REVQVGDRIR VRPGEKVPVD GVILEGSSTL 300
  301 DESMVTGESL PVLKSAGDEV IGATLNRTGS FVMEARRVGK DTVLAQIVRL VQEAQGSKAP 360
  361 IQQVADRVTA WFVPAVIGVA VLTFVLWWVL ADNLTLALVN TIGVLIIACP CALGLATPTS 420
  421 ILVATGRGAE LGILVKSGDS LELAHHLRTV VLDKTGTLTE GRPTVTDIWA HGSSPLAVLR 480
  481 LAAAVERHSE HPLAQAVVQK AEAEKIVIPP AQHFQARIGS GAEAWVEDQW ICIGRLSWLQ 540
  541 EMGIPWDPSW SERVQTWESQ GKTVIGVAQS QSLVGLLAIA DPLKPTSPEA VQQLQQMGLE 600
  601 VILLTGDNPT TAQAVARQAG IQRVIAQVRP DQKAAYIRSL RQPRRRVAMV GDGINDAPAL 660
  661 AEADVGIAIG TGTDVAMAAS DITLMSGDLR GVATAIQLSR ATLNNIRQNL FFAFIYNTLG 720
  721 IPIAAGALYP FTGWLLNPML AGAAMALSSV SVVANALRLR HFQPPRPAGR R

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle