YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86608476, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHEAPTSSA DPKASAAPFQ IPPLSQSSPV QLSLVIPTYN EASSICSLIR QLCAHLDTIL  60
   61 PGSYELIVVD DNSPDYTAKV AQGLQKEFPQ LQVICRHHER GLATAVLRGW QAARGEVLGV 120
  121 MDGDLQHPPE IVLKLWPLIQ KGADLVVGSR YAPSGGVSHW SLGRRIVSRG AQWIGLVLLP 180
  181 GVFSRVSDPL SGLFLVRRQA IAGIPLNPKG YKLLIEVLAR GRVKTIAEVG YIFQERQNGE 240
  241 SKIQLQTCLQ YLHHLMVLRF SLGQVGSFLR FSTVGLSGTL VDMALLYVLH DPTNLGWDLI 300
  301 TSKLVASEVA ILNNFLWNDL WTFRHVTRLQ PGPWNRLKRL AKFNVICLIG LVLNTSLVTL 360
  361 LSERLGIHYL LANLIAIGIV VFWNFYLNSK LSWRSAEVKS DSVGGQS

Type	Start	End	Confidence
Cytoplasmic	1	267	0.79
Transmembrane Helix	268	289	0.81
Non-Cytoplasmic	290	298	0.76
Transmembrane Helix	299	321	0.71
Cytoplasmic	322	339	0.92
Transmembrane Helix	340	361	0.90
Non-Cytoplasmic	362	366	0.80
Transmembrane Helix	367	387	0.95
Cytoplasmic	388	407	0.97