YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86607088, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEPAAPEL SVVIPCKNEA DNLEHLFERL RLTLDPLGIP YEIICVNDGS EDDTLEKLIA  60
   61 FHRQDPRIKV VNLSRGFGKE IALTAGLDYA AGRAVVPIDA DLQDPPELIP EMLQQWRQGY 120
  121 QVVYAVRRSR RGESWLKRLT ANGFYWVIDQ LSQVRIPRNT GDFRLLDRQV VDAIRQLRER 180
  181 TRFMKGIFAW VGYRQVAIFY DRAPRFRGKS QWNYWRLWNL AIEGITSFSS WPLRVWSYLG 240
  241 LGISVLALLY GLFLIIRTLL FGSDVPGYAS LAVMTLFLGG IQLISLGVIG EYLGRVFEEV 300
  301 KGRPLYLVQG AFGFETSGHS PSPGSYPVCS SGSLPTQKPG

Type	Start	End	Confidence
Cytoplasmic	1	234	0.82
Transmembrane Helix	235	260	0.84
Non-Cytoplasmic	261	267	0.53
Transmembrane Helix	268	293	0.81
Cytoplasmic	294	340	0.58